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Epydoc

We use Epydoc for building the API documentation of Biskit.

  1. Install Graphviz package:

    cd /usr/local/src
wget http://www.graphviz.org/pub/graphviz/ARCHIVE/graphviz-2.12.tar.gz
tar xvfz graphviz*.tar.gz
cd graphviz-*/
./configure --prefix=/usr/local
make
make install

    Troubleshooting:

    If compilation failes with "cannot find -lpython2.5", try this:

    export LDFLAGS="-L/usr/local/lib/python2.5/config -L."
make clean
./configure --prefix=/usr/local; make; make install

    Note:

    For Ubuntu, graphviz is available as package graphviz and graphviz-dev.

  2. Fetch Epydoc:

    cd /usr/local/src
sudo wget http://downloads.sourceforge.net/epydoc/epydoc-3.0beta1.tar.gz
sudo tar xvfz epydoc*
sudo rm epydoc*tar.gz

    Note:

    For Ubuntu, epydoc 2.1 is available as package python-epydoc .

  3. Compile and install epydoc:

    cd epydoc*
sudo python setup.py install