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Older instructions
Installation instructions for deprecated tools or versions that are not any longer officially supported
- Amber version 12
- Installing the Amber simulation package (Amber 12)
- HMMER
- Install hidden markov model sequence analysis tools.
- Pfam database
- Install Pfam database for HMMER
- Fold-X
- Download and install Fold-X
- ICM-Browser
- ICM-Browser is the free version of Ruben Abagayan's ICM program. There is lots of interesting functionality in there. Biskit right now only wraps a single method -- the calculation of CAD (Contact Area Difference) as a better behaved alternative to the classic RMSD measure for structure comparison.
- MSMS
- Quick instructions for installing the msms program for molecular surface calculations.
- Intervor
- Compilers
- Installing custom compilers
- Reduce
- Install the Reduce program for adding of hydrogens to proteins and nucleic acids (Word et al. 1999)