DelPhi
Program binaries and documentation are provided at the Honig Lab home page:
http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:DelPhi
Note: The Biskit wrapper for Delphi also requires the Reduce program, which is part of AmberTools (but can also be installed separately).
Request download link from:
http://bhapp.c2b2.columbia.edu/software/cgi-bin/software.pl?input=DelPhi
Which version? We have tested with Linux_SinglePrecision
Unpack and move to system-wide location:
tar xvfz DelPhi_Linux_SP_F95.tar.gz sudo mv DelPhi*/ /usr/local/lib/delphi_sp ln -s /usr/local/lib/delphi_sp/executable/delphi95 /usr/local/bin/delphi
...or any other location that is in your search $PATH. As always, you can also configure Biskit to find the program somewhere else:
Adapt biskit settings (optional):
This would only be necessary if the executable has a different name or is not in the search $PATH. Make a local copy of the exe_reduce.dat configuration file and adapt it accordingly:
cd /usr/lib/python2.6/site-packages/Biskit/data/defaults cp exe_delphi.dat ~/.biskit/
Then edit the "bin=" line in the [BINARY] section of this file.
Test your installation:
cd biskit/Biskit/ python delphi.py
Should yield:
<....some example data ....> --------------------------------------- Ran 2 tests in 19.821s OK
- Usage:
- see Biskit.Delphi: Biskit.Delphi description
- see Biskit.Dock.DelphiBindingEnergy
- see scripts/Dock/delphiBinding.py
- Configuration:
- see Biskit/data/defaults/exe_delphi.dat