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Step-by-step examples
Tutorial 1: Protein - DNA interaction
In this tutorial we will analyze the structure of a Meganuclease protein bound to DNA. We first spend some time poking through the different data of PDBModel (the representation of a structure). We then extract some chains, calculate pairwise distances and contacts between atoms and visualize the results. Finally, we produce a Pymol image with the protein surface colored by contacts and sequence conservation.
Tutorial 2: Basic structure handling
A perhaps better starting point is this tutorial describing loading, saving and comparison of structures. There is no online-description yet.
File PDF document Tutorial 2 presentation
Sparse presentation used for tutorial 2.